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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_07775-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19621.6 Da PI: 10.4071 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +G +W+ +++ g+ R++k+c++rw +yl TRIUR3_07775-P1 14 KGPWTAEEDQKLVGFLLTHGHYCWRVVPKLAGLLRCGKSCRLRWTNYL 61 79******************99**********99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-21 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.234 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.87E-19 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.33E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.507 | 62 | 105 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-6 | 63 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVGFLL THGHYCWRVV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SDEEQQLVID LHAQLGNRKE ADTSEIAGRL IWLSRRRRKR KRHTEGHRSK 120 VGDESVDGVP ILDAAKRPPK LQETTHFKNG ASCTSKRRSL DDKPIAHGPE CPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-15 | 12 | 99 | 5 | 91 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 110 | RRRRKRK |
2 | 105 | 111 | RRRKRKR |
3 | 106 | 111 | RRKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT008981 | 1e-142 | BT008981.2 Triticum aestivum clone wdk2c.pk006.d4:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965175.1 | 2e-55 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q50EX6 | 8e-51 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | M7ZYI4 | 1e-125 | M7ZYI4_TRIUA; Protein ODORANT1 | ||||
STRING | MLOC_14021.1 | 9e-59 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 6e-54 | myb domain protein 20 |